PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10000982m
Common NameCICLE_v10000982mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 484aa    MW: 52768.8 Da    PI: 9.009
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10000982mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.4e-05100122123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C+k F r  nL+ H r H
  Ciclev10000982m 100 FVCEICNKGFQRDQNLQLHRRGH 122
                      89*******************88 PP

2zf-C2H212.20.00056176198123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k +  +s+ k H +t+
  Ciclev10000982m 176 WKCDKCSKKYAVQSDWKAHSKTC 198
                      58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-599122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.44E-799122No hitNo description
PROSITE profilePS5015710.949100122IPR007087Zinc finger, C2H2
SMARTSM003550.017100122IPR015880Zinc finger, C2H2-like
PfamPF121717.6E-5100122IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
SMARTSM0035596141171IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-4164197IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.44E-7171196No hitNo description
SMARTSM00355150176196IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MSNITGDAVS FSSSGNNINN HHHHGEEVHQ QQGLVSQFLV TNSLASSTTT ATNNSSSNGS  60
SSTTQPPPPA KRKRNLPGNP DPTAEVIALS PNSLMATNRF VCEICNKGFQ RDQNLQLHRR  120
GHNLPWKLRQ RSTTEIRKRV YVCPEPSCVH HNPARALGDL TGIKKHFSRK HGEKKWKCDK  180
CSKKYAVQSD WKAHSKTCGT KEYKCDCGTI FSRRDSFITH RAFCDALAEE SQKANQGVNP  240
QLGHVSEHIS SMPINNHTEN NNNPLAHHEL MPMPPKPFNT MAAASIFESS NNNLQQSAAA  300
SASLSATALL QKAAQMGATA SNGSMISSPM MHKSLVTSMA PPSFVAIPKD HQSLSAAAAS  360
MEEISLSSSA QFFSANIGHA EGSSAMNDVG MFYRFLDQNN AALMKSLEHD ESNKSGNNQS  420
VLNNGDVMTV DFMGIGGSRT RNHFQQQQSQ ELKFGSGISN IGQPRMQSLS HFQQQQQDVP  480
FLN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006472060.10.0PREDICTED: protein indeterminate-domain 2-like
RefseqXP_006433386.10.0hypothetical protein CICLE_v10000982mg
SwissprotQ9SCQ61e-115IDD2_ARATH; Protein indeterminate-domain 2
TrEMBLV4TAN50.0V4TAN5_9R
STRINGPOPTR_0005s02730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15443818
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-101C2H2 family protein